Index (VolVis 1.1 API)

A C D E G I L M P R S T U V
All Classes and Interfaces|All Packages|Serialized Form

A

addPoint(double[]) - Method in class com.sanderjurgens.volvis.gui.TransferFunctionTab: Add a given point to the transfer function.
addRenderer(Renderer) - Method in class com.sanderjurgens.volvis.gui.RenderingTab: Add a new renderer to the selection.
addRenderer(Renderer) - Method in class com.sanderjurgens.volvis.visualization.Visualization: Add the given renderer to the visualization.
addRenderer(String) - Method in class com.sanderjurgens.volvis.gui.TransferFunctionTab: Add the given renderer to notification list for transfer function changes.
AverageRenderer - Class in com.sanderjurgens.volvis.visualization: A renderer that uses ray casting to compute the average intensity projection of the volume.
AverageRenderer(String, RenderingTab) - Constructor for class com.sanderjurgens.volvis.visualization.AverageRenderer: Constructs a renderer to visualize the volume based on ray casting to compute the average intensity projection.

C

CenterRenderer - Class in com.sanderjurgens.volvis.visualization: A renderer that uses ray casting to compute a centered slice of the volume.
CenterRenderer(String, RenderingTab) - Constructor for class com.sanderjurgens.volvis.visualization.CenterRenderer: Constructs a renderer to visualize the volume based on ray casting to compute a centered slice of the volume.
com.sanderjurgens.volvis.gui - package com.sanderjurgens.volvis.gui
com.sanderjurgens.volvis.util - package com.sanderjurgens.volvis.util
com.sanderjurgens.volvis.visualization - package com.sanderjurgens.volvis.visualization
com.sanderjurgens.volvis.volume - package com.sanderjurgens.volvis.volume
computeSlices(boolean) - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Set whether the slicer should be computing slices for a new image.
crossproduct(double[], double[]) - Static method in class com.sanderjurgens.volvis.util.VectorMath: Compute the cross product of the two given vectors.

D

display(GLAutoDrawable) - Method in class com.sanderjurgens.volvis.visualization.Visualization: Render the graphical context.
dispose(GLAutoDrawable) - Method in class com.sanderjurgens.volvis.visualization.Visualization: Dispose of the graphical rendering context.
distance(double[], double[]) - Static method in class com.sanderjurgens.volvis.util.VectorMath: Compute the distance between the two given vectors.
dotproduct(double[], double[]) - Static method in class com.sanderjurgens.volvis.util.VectorMath: Compute the dot product of the two given vectors.
drag(int, int) - Method in class com.sanderjurgens.volvis.util.TrackballCamera: Update camera position based on new mouse coordinates.

E

EDGE_TABLE - Static variable in class com.sanderjurgens.volvis.visualization.MarchingCubesData: The edges of the cube on which a triangle vertex should be drawn given a specific configuration as index

G

getColor(short) - Method in class com.sanderjurgens.volvis.gui.TransferFunctionTab: Returns the color (including opacity) for a given voxel value.
getData() - Method in class com.sanderjurgens.volvis.volume.Volume: Returns the density data.
getDiagonal() - Method in class com.sanderjurgens.volvis.volume.Volume: Returns the diagonal of the volume.
getDimX() - Method in class com.sanderjurgens.volvis.volume.Volume: The x dimension of the volume.
getDimY() - Method in class com.sanderjurgens.volvis.volume.Volume: The y dimension of the volume.
getDimZ() - Method in class com.sanderjurgens.volvis.volume.Volume: The z dimension of the volume.
getImage() - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Returns the rendered 2D image of the volume.
getIsovalue() - Method in class com.sanderjurgens.volvis.gui.RenderingTab: Return the isovalue for rendering the 3D isosurface using the Marching Cubes algorithm.
getMaximum() - Method in class com.sanderjurgens.volvis.volume.Volume: Return the maximum density in the volume.
getMinimum() - Method in class com.sanderjurgens.volvis.volume.Volume: Return the minimum density in the volume.
getName() - Method in class com.sanderjurgens.volvis.visualization.MarchingCubesRenderer: Returns the name of the renderer.
getName() - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Returns the name of the renderer.
getName() - Method in interface com.sanderjurgens.volvis.visualization.Renderer: Returns the name of the renderer.
getNumThreads() - Method in class com.sanderjurgens.volvis.gui.RenderingTab: Return the number of computational render threads.
getOpacity() - Method in class com.sanderjurgens.volvis.gui.RenderingTab: Return the opacity of the contour surfaces.
getRayWidth() - Method in class com.sanderjurgens.volvis.gui.RenderingTab: Return the selected ray width for the raycasting renderer.
getRenderingTab() - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Returns the tab containing the rendering settings.
getSelectedRenderer() - Method in class com.sanderjurgens.volvis.gui.RenderingTab: Returns the selected renderer.
getSemaphore() - Method in class com.sanderjurgens.volvis.util.SlicerMaster: Returns the semaphore controlling whether slaves may start computing.
getStepSize() - Method in class com.sanderjurgens.volvis.gui.RenderingTab: Return the selected step size for the raycasting renderer.
getThickness() - Method in class com.sanderjurgens.volvis.gui.RenderingTab: Return the thickness the contour surfaces.
getThreadCount() - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Return the current number of slaves computing slices.
getTransformationMatrix() - Method in class com.sanderjurgens.volvis.util.TrackballCamera: Returns the view transformation matrix.
getTriVoxel(double[]) - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Returns the value at the given coordinate by trilinear interpolation of nearby voxels.
getValue() - Method in class com.sanderjurgens.volvis.gui.RenderingTab: Return the (iso)value for contour surfaces rendering.
getViewMatrix() - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Returns the current view matrix of the visualization.
getVolume() - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Returns the volume to be rendered.
getVoxel(int) - Method in class com.sanderjurgens.volvis.volume.Volume: Get the density value for the given index.
getVoxel(int, int, int) - Method in class com.sanderjurgens.volvis.volume.Volume: Get the density value for the given voxel coordinate.
gradient(double[]) - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Calculate the approximated gradient at the given coordinate.

I

init(GLAutoDrawable) - Method in class com.sanderjurgens.volvis.visualization.Visualization: Initialize the graphical rendering context.
isComputingSlices() - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Returns whether the slicer is currently computing slices for a new image.
IsovalueSurfacesRenderer - Class in com.sanderjurgens.volvis.visualization: A renderer that uses ray casting and a transfer function to compute isovalue contour surfaces of the volume.
IsovalueSurfacesRenderer(String, RenderingTab, TransferFunctionTab) - Constructor for class com.sanderjurgens.volvis.visualization.IsovalueSurfacesRenderer: Constructs a renderer to visualize the volume based on ray casting and a transfer function to compute isovalue contour surfaces.
isRotating() - Method in class com.sanderjurgens.volvis.util.TrackballCamera: Returns whether the camera is currently rotating.
isSlicerRunning() - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Returns whether the slicer is currently running.

L

length(double[]) - Static method in class com.sanderjurgens.volvis.util.VectorMath: Compute the length of the given vector.

M

main(String[]) - Static method in class com.sanderjurgens.volvis.gui.MainFrame
MainFrame - Class in com.sanderjurgens.volvis.gui: The main GUI interface.
MainFrame() - Constructor for class com.sanderjurgens.volvis.gui.MainFrame: Constructs a new MainFrame.
MarchingCubesData - Class in com.sanderjurgens.volvis.visualization: Support class for the Marching Cubes renderer, containing data about cube configurations.
MarchingCubesData() - Constructor for class com.sanderjurgens.volvis.visualization.MarchingCubesData
MarchingCubesRenderer - Class in com.sanderjurgens.volvis.visualization: A renderer based on the marching cubes algorithm.
MarchingCubesRenderer(String, RenderingTab) - Constructor for class com.sanderjurgens.volvis.visualization.MarchingCubesRenderer: Constructs a renderer to visualize the volume based on the marching cubes algorithm.
MaximumRenderer - Class in com.sanderjurgens.volvis.visualization: A renderer that uses ray casting to compute the maximum intensity projection of the volume.
MaximumRenderer(String, RenderingTab) - Constructor for class com.sanderjurgens.volvis.visualization.MaximumRenderer: Constructs a renderer to visualize the volume based on ray casting to compute the maximum intensity projection.

P

pointsInRange(MouseEvent) - Method in class com.sanderjurgens.volvis.gui.TransferFunctionTab: Return the list of points in range of the mouse location.

R

RaycastingRenderer - Class in com.sanderjurgens.volvis.visualization: Abstract renderer based on a ray casting algorithm to render a 2D texture of the volume.
RaycastingRenderer(String, RenderingTab) - Constructor for class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Constructs a renderer to visualize the volume based on a ray casting algorithm to render a 2D image of the volume.
readPointsChanged(String) - Method in class com.sanderjurgens.volvis.gui.TransferFunctionTab: Read whether there is a notification regarding a change in the transfer function points for the given renderer.
render(GL2) - Method in class com.sanderjurgens.volvis.visualization.AverageRenderer: Render the volume using the given graphical interface.
render(GL2) - Method in class com.sanderjurgens.volvis.visualization.CenterRenderer: Render the volume using the given graphical interface.
render(GL2) - Method in class com.sanderjurgens.volvis.visualization.IsovalueSurfacesRenderer: Render the volume using the given graphical interface.
render(GL2) - Method in class com.sanderjurgens.volvis.visualization.MarchingCubesRenderer: Render the volume using the given graphical interface.
render(GL2) - Method in class com.sanderjurgens.volvis.visualization.MaximumRenderer: Render the volume using the given graphical interface.
render(GL2) - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Render the volume using the given graphical interface.
render(GL2) - Method in interface com.sanderjurgens.volvis.visualization.Renderer: Render the volume using the given graphical interface.
render(GL2) - Method in class com.sanderjurgens.volvis.visualization.TransferFunctionRenderer: Render the volume using the given graphical interface.
Renderer - Interface in com.sanderjurgens.volvis.visualization: Renderer interface.
RenderingTab - Class in com.sanderjurgens.volvis.gui: The RenderingTab is a Swing JPanel designed to adjust the settings of the volume renderers.
RenderingTab() - Constructor for class com.sanderjurgens.volvis.gui.RenderingTab: Constructs a new RenderingTab.
reshape(GLAutoDrawable, int, int, int, int) - Method in class com.sanderjurgens.volvis.visualization.Visualization: Reshape of the canvas on which the graphical rendering is rendered.
restarted() - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Notify that computation of slices has restarted.
rotate() - Method in class com.sanderjurgens.volvis.volume.Volume: Rotate volume by 180 degrees along the x-axis.
run() - Method in class com.sanderjurgens.volvis.util.SlicerMaster: The routine of the master, makes slaves compute slices if new image is required by the renderer.
run() - Method in class com.sanderjurgens.volvis.util.SlicerSlave: The routine of the slave, computing a single slice of the rendered image.

S

setCompleted(int, boolean) - Method in class com.sanderjurgens.volvis.util.SlicerMaster: Sets the completed state of a given slave's task to given value.
setDimensions(int, int) - Method in class com.sanderjurgens.volvis.util.TrackballCamera: Set the dimensions of the view to the given values.
setInteractiveMode(boolean) - Method in class com.sanderjurgens.volvis.visualization.MarchingCubesRenderer: Set whether the user is interacting with the volume through the canvas.
setInteractiveMode(boolean) - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Set whether the user is interacting with the volume through the canvas.
setInteractiveMode(boolean) - Method in interface com.sanderjurgens.volvis.visualization.Renderer: Set whether the user is interacting with the volume through the canvas.
setVector(double[], double, double, double) - Static method in class com.sanderjurgens.volvis.util.VectorMath: Assign the given coefficients to the given vector.
setVolume(Volume) - Method in class com.sanderjurgens.volvis.gui.RenderingTab: Adjust the settings to a newly loaded volume.
setVolume(Volume) - Method in class com.sanderjurgens.volvis.gui.TransferFunctionTab: Adjust the settings to a newly loaded volume.
setVolume(Volume) - Method in class com.sanderjurgens.volvis.visualization.AverageRenderer: Set the given volume as the one to be rendered.
setVolume(Volume) - Method in class com.sanderjurgens.volvis.visualization.CenterRenderer: Set the given volume as the one to be rendered.
setVolume(Volume) - Method in class com.sanderjurgens.volvis.visualization.IsovalueSurfacesRenderer: Set the given volume as the one to be rendered.
setVolume(Volume) - Method in class com.sanderjurgens.volvis.visualization.MarchingCubesRenderer: Set the given volume as the one to be rendered.
setVolume(Volume) - Method in class com.sanderjurgens.volvis.visualization.MaximumRenderer: Set the given volume as the one to be rendered.
setVolume(Volume) - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Set the given volume as the one to be rendered.
setVolume(Volume) - Method in interface com.sanderjurgens.volvis.visualization.Renderer: Set the given volume as the one to be rendered.
setVolume(Volume) - Method in class com.sanderjurgens.volvis.visualization.TransferFunctionRenderer: Set the given volume as the one to be rendered.
setVolume(Volume) - Method in class com.sanderjurgens.volvis.visualization.Visualization: Set the given volume as the one to be rendered.
setVoxel(int, int, int, short) - Method in class com.sanderjurgens.volvis.volume.Volume: Set the density value for the given voxel coordinate.
setVoxel(int, short) - Method in class com.sanderjurgens.volvis.volume.Volume: Set the density value for the given index.
shouldRestart() - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Returns whether the computing of slices should be restarted.
slice(int, int) - Method in class com.sanderjurgens.volvis.visualization.AverageRenderer: Produce a slice of the 2D image using a specific ray casting algorithm, from a given starting height up to and including a given ending height based on the number of compute threads.
slice(int, int) - Method in class com.sanderjurgens.volvis.visualization.CenterRenderer: Produce a slice of the 2D image using a specific ray casting algorithm, from a given starting height up to and including a given ending height based on the number of compute threads.
slice(int, int) - Method in class com.sanderjurgens.volvis.visualization.IsovalueSurfacesRenderer: Produce a slice of the 2D image using a specific ray casting algorithm, from a given starting height up to and including a given ending height based on the number of compute threads.
slice(int, int) - Method in class com.sanderjurgens.volvis.visualization.MaximumRenderer: Produce a slice of the 2D image using a specific ray casting algorithm, from a given starting height up to and including a given ending height based on the number of compute threads.
slice(int, int) - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Produce a slice of the 2D image using a specific ray casting algorithm, from a given starting height up to and including a given ending height based on the number of compute threads.
slice(int, int) - Method in class com.sanderjurgens.volvis.visualization.TransferFunctionRenderer: Produce a slice of the 2D image using a specific ray casting algorithm, from a given starting height up to and including a given ending height based on the number of compute threads.
SlicerMaster - Class in com.sanderjurgens.volvis.util: Master of a set of slave threads, each computing a slice of a rendering image.
SlicerMaster(RaycastingRenderer, int) - Constructor for class com.sanderjurgens.volvis.util.SlicerMaster: Constructs the master for a set of slice computing slaves.
SlicerSlave - Class in com.sanderjurgens.volvis.util: A slave thread computing a slice of the rendering image.
SlicerSlave(RaycastingRenderer, SlicerMaster, int, int, int) - Constructor for class com.sanderjurgens.volvis.util.SlicerSlave: Constructs a slave which computes a slice for a given renderer, under the control of a master slicer.
startDragging(int, int) - Method in class com.sanderjurgens.volvis.util.TrackballCamera: Start dragging the camera from the given mouse coordinates.
startSlicer(RaycastingRenderer, int) - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Start the slicer and allow it to compute slices using an amount of slaves equal to the given number of threads and the slice method of the given renderer.
stop() - Method in class com.sanderjurgens.volvis.visualization.AverageRenderer: Stop rendering the volume, if still relevant.
stop() - Method in class com.sanderjurgens.volvis.visualization.CenterRenderer: Stop rendering the volume, if still relevant.
stop() - Method in class com.sanderjurgens.volvis.visualization.IsovalueSurfacesRenderer: Stop rendering the volume, if still relevant.
stop() - Method in class com.sanderjurgens.volvis.visualization.MarchingCubesRenderer: Stop rendering the volume, if still relevant.
stop() - Method in class com.sanderjurgens.volvis.visualization.MaximumRenderer: Stop rendering the volume, if still relevant.
stop() - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Stop rendering the volume, if still relevant.
stop() - Method in interface com.sanderjurgens.volvis.visualization.Renderer: Stop rendering the volume, if still relevant.
stop() - Method in class com.sanderjurgens.volvis.visualization.TransferFunctionRenderer: Stop rendering the volume, if still relevant.
stopRotating() - Method in class com.sanderjurgens.volvis.util.TrackballCamera: Stop the current camera rotation.
stopSlicer() - Method in class com.sanderjurgens.volvis.visualization.RaycastingRenderer: Stop the currently running slicer, if any.

T

TrackballCamera - Class in com.sanderjurgens.volvis.util: Support class for trackball camera rotation.
TrackballCamera(int, int) - Constructor for class com.sanderjurgens.volvis.util.TrackballCamera: Constructs a trackball camera given certain view dimensions.
TransferFunctionRenderer - Class in com.sanderjurgens.volvis.visualization: A renderer that uses ray casting and a transfer function to compute a colored intensity projection of the volume.
TransferFunctionRenderer(String, RenderingTab, TransferFunctionTab) - Constructor for class com.sanderjurgens.volvis.visualization.TransferFunctionRenderer: Constructs a renderer to visualize the volume based on ray casting and a transfer function to compute the colored intensity projection.
TransferFunctionTab - Class in com.sanderjurgens.volvis.gui: The TransferFunctionTab is a Swing JPanel designed to adjust the color settings of some transfer function volume renderers.
TransferFunctionTab() - Constructor for class com.sanderjurgens.volvis.gui.TransferFunctionTab: Constructs a new HistogramTab.
TRIANGLE_TABLE - Static variable in class com.sanderjurgens.volvis.visualization.MarchingCubesData: The (edge) vertices to combine to draw triangles for the isosurface

U

update() - Method in class com.sanderjurgens.volvis.visualization.Visualization: Update the canvas by repainting it.
update(GL2) - Method in class com.sanderjurgens.volvis.util.TrackballCamera: Update view transformation matrix based on the camera rotation.

V

VectorMath - Class in com.sanderjurgens.volvis.util: Support class for basic 3D vector operations.
VectorMath() - Constructor for class com.sanderjurgens.volvis.util.VectorMath
VERTEX_TABLE - Static variable in class com.sanderjurgens.volvis.visualization.MarchingCubesData: The cube vertices at the end of an edge
Visualization - Class in com.sanderjurgens.volvis.visualization: Class in charge of updating the visualization, partially based on the selected renderer.
Visualization(GLCanvas, RenderingTab) - Constructor for class com.sanderjurgens.volvis.visualization.Visualization: Constructs a visualization to display the volume on the canvas.
Volume - Class in com.sanderjurgens.volvis.volume: A volume consisting of density values in a 3 dimensional space.
Volume(int, int, int) - Constructor for class com.sanderjurgens.volvis.volume.Volume: Constructs an empty volume given certain dimensions.
Volume(InputStream) - Constructor for class com.sanderjurgens.volvis.volume.Volume: Constructs a volume based on a data stream.

A C D E G I L M P R S T U V
All Classes and Interfaces|All Packages|Serialized Form